scanner3d {
  scanner2d {
    frequency_hz: 7920
    nscans: 768
    line_duty_cycle: 0.99
    daq {
      kind: NIDAQ
      nidaq {
        ao_samples_per_waveform: 16448
        trigger: "APFI1"
        ctr: "ctr0"
        armstart: "PFI15"
        name: "Dev1"
        level_volts: 0.5
        flyback_scans: 1
        frame_trigger_out: "PFI1"
      }
    }
    digitizer {
      kind: Alazar
      alazar {
        system_id: 1
        sample_rate: SAMPLE_RATE_125MSPS
        channels {
          board_id: 0
          chan_id: CHANNEL_A
          range: INPUT_RANGE_PM_1_V
          enabled: true
        }
        channels {
          board_id: 0
          chan_id: CHANNEL_B
          range: INPUT_RANGE_PM_1_V
          enabled: true
        }
        aux_out_board_id: 1
      }
    }
    pockels {
      kind: NIDAQ
      laser: Chameleon
      name: "Chameleon"
      calibration {
        calibrated: true
        v_zero: 0
        v_max: 0.85
      }
      nidaq {
        v_lim_max: 2
        v_lim_min: -2
        v_open: 0.56666666666666676
        v_closed: 0
        ao_channel: "ao2"
      }
      simulated {
      }
    }
    pockels {
      kind: NIDAQ
      laser: Fianium
      name: "Fidelity (1064nm)"
      calibration {
        calibrated: true
        v_zero: 0
        v_max: 1.4
      }
      nidaq {
        v_lim_max: 2
        v_lim_min: -2
        v_open: 0.51661416739176347
        v_closed: 0
        ao_channel: "ao3"
      }
      simulated {
      }
    }
    shutter {
      kind: Simulated
      simulated {
      }
    }
    linear_scan_mirror {
      kind: NIDAQ
      nidaq {
        v_lim_max: 10
        v_lim_min: -10
        vpp: 13.2
        ao_channel: "ao0"
      }
    }
  }
  zpiezo {
    kind: NIDAQ
    nidaq {
      um2v: 0.03982
      v_lim_max: 10
      v_lim_min: -3
      v_offset: 0
      channel: "ao1"
    }
    um_max: 250
    um_min: 0
    um_step: 1
  }
  zref_um: 0
}
stage {
  kind: C843
  c843 {
    id: 1
    axis {
      id: 1
      stage: "M-511.DD_NEW_X"
    }
    axis {
      id: 2
      stage: "M-511.DD_NEW_Y"
    }
    axis {
      id: 3
      stage: "M-405.CG_NEW_Z"
    }
  }
  default_velocity_mm_per_sec {
    x: 2
    y: 4
    z: 0.3
  }
  last_target_mm {
    x: 72.0886
    y: 14.23455
    z: 32.911957
  }
  tilemode: PixelAligned
  use_two_dimensional_tiling: true
  tile_z_offset_mm: -0.014642862603068352
}
vibratome {
  kind: Serial
  serial {
    port: "COM2"
    amplitude: 255
  }
  feed_axis: Y
  feed_vel_mm_per_sec: 0.1
  feed_mm: 23
  geometry {
    cut_pos_mm {
      x: 67.024002075195313
      y: 70.991996765136719
    }
    dz_mm: 1.8150005340576172
  }
  cut_thickness_um: 175
}
fov {
  x_size_um: 384.72339
  y_size_um: 456.35
  z_size_um: 250
  x_overlap_um: 60
  y_overlap_um: 25
  z_overlap_um: 75
  rotation_radians: 0
}
pipeline {
  frame_average_count: 1
  downsample_count: 4
}
file_series {
  root: "G:\\Data"
  date: "2018-10-04"
  seriesno: 2731
  pathsep: "\\"
}
file_prefix: "ngc"
stack_extension: ".tif"
config_extension: ".microscope"
autotile {
  z_um: 175
  maxz_mm: 42.5
  timeout_ms: 15000
  ichan: 0
  intensity_threshold: 11500
  area_threshold: 0.1
  search_radius: 2
  use_adaptive_tiling: true
  use_explore: true
}
surface_probe {
  simulated {
  }
}
surface_scan {
}
time_series {
  interval_ms: 300000
}
surface_find {
  backup_frac: 0.8
  max_backup_um: 125
  max_raise_um: 40
  min_um: 0
  max_um: 150
  dz_um: 5
  ichan: 0
  intensity_threshold: 11800
  area_threshold: 0.1
  offset_um: 0
}
adaptive_tiling {
  every: 3
  mindist: 2
}
trip_detect {
  threshold {
    ichan: 0
    intensity_threshold: 11400
    area_threshold: 0.0001
  }
  threshold {
    ichan: 1
    intensity_threshold: 16100
    area_threshold: 0.0001
  }
  frame_threshold: 1500
}
pmt {
  simulated {
  }
}
backup_distance_mm: 2.5