{ "softwareVersion": "233.230615.567", "startDateTime": "2024-12-05T10:27:17-08:00", "userId": "Local User", "experimentId": "202412051027_1403800905_VMSC02101", "experimentName": "1403800905", "experimentDescription": "741564.104 (1403800905), 741564.106 (1403801439)\nMouse\nCM1413", "experimentDirectory": "D:\\MERSCOPEDATA\\202412051027_1403800905_VMSC02101", "codebookName": "codebook_0_CM1413-allen-mouse-p0_CM1413-allen-mouse-p0.csv", "codebookId": "CM1413-allen-mouse-p0", "panelName": "CM1413-allen-mouse-p0", "sampleThickness": "10", "additionalStains": [ "DAPI - Protein (Medium)", "PolyT - Protein (Medium)" ], "fiducialColor": "488", "usedReadouts": [ "V0001T8B1", "V0002T8B1", "V0003T8B1", "V0004T8B1", "V0005T8B1", "V0006T8B1", "V0007T8B1", "V0008T8B1", "V0009T8B1", "V0010T8B1", "V0011T8B1", "V0012T8B1", "V0013T8B1", "V0014T8B1", "V0015T8B1", "V0016T8B1", "V0017T8B1", "V0018T8B1", "V0019T8B1", "V0154T8B1", "V0021T8B1", "V0022T8B1", "V0023T8B1", "V0024T8B1", "V0025T8B1", "DAPI", "PolyT" ], "usedHybridizationBuffers": [ "1", "3", "7", "9", "11", "15", "17", "19", "21" ], "cartridgeBarcode": "0010194202505210018895", "regionSummaries": [ { "name": "1403801439", "startIndex": 0, "endIndex": 1153 }, { "name": "1403800905", "startIndex": 1154, "endIndex": 2110 } ], "measurementStartDateTime": "2024-12-05T10:51:08-08:00", "endDateTime": "2024-12-06T15:15:53-08:00", "fovCount": 2111, "runMode": "Experiment", "cell_metrics": [ { "region_id": 0, "metrics": { "num_cells": 490572, "volume_stats": { "min": 8.747693257943402, "pct_5": 13.11471633397277, "pct_25": 36.705766493534014, "pct_50": 95.30235418927731, "pct_75": 338.1500098709714, "pct_95": 1139.0367800677204, "max": 20093.62782120961, "mean": 285.13916798425794 }, "transcript_count_stats": { "min": 0.0, "pct_5": 0.0, "pct_25": 0.0, "pct_50": 22.0, "pct_75": 229.0, "pct_95": 1234.0, "max": 29087.0, "mean": 240.3326851104425 }, "ratio_covered": 0.2752985353621194, "ratio_transcripts_within_cell": 0.472101185338281, "num_cells_with_no_transcripts": 167895, "enrichment": { "Neurod6": 0.46582095817809727, "Nr2f2": 0.42664989799513325, "Mef2c": 0.4124758784422261, "Nfib": 0.45379999173465635, "Nfix": 0.33476912886647303, "Zeb2": 0.4503360371907179, "Tcf7l2": 0.41527321149219526, "Id4": 0.4090493962994125, "Zic1": 0.4603504821448883, "Neurod2": 0.43058762390636396, "Sox5": 0.5468311903962543, "Tbr1": 0.4537349350609561, "Bhlhe22": 0.36606408767100035, "Nr2f1": 0.43649415133562475, "Foxg1": 0.5274492042379489, "Bcl11b": 0.40688277686079033, "Sox2": 0.4472926693056947, "Satb1": 0.4338740950733003, "Pou3f3": 0.4398500981050885, "Zic2": 0.4570123833387805, "Nr4a3": 0.42800472982302107, "Dlx1": 0.5061694645305933, "Etv5": 0.43372446433701783, "Arx": 0.4536648900714264, "Satb2": 0.46648697366093617, "Jun": 0.44560120192347513, "Tox": 0.4894520540448842, "Rxrg": 0.4795067133941261, "Tshz2": 0.38684981765768944, "Tfap2b": 0.4640592416053113, "Pbx3": 0.470124417893598, "Nr4a2": 0.44119240297770623, "Isl1": 0.5405536716441589, "Tfap2d": 0.49591776509935076, "Zfhx3": 0.48380874040873784, "Zfp521": 0.5074453118056264, "Foxp2": 0.49330043541364293, "Nhlh2": 0.46564066615685273, "Lhx2": 0.40824641003305484, "Zhx2": 0.4184262768453348, "Pax6": 0.46999417876483973, "Olig1": 0.33869044717213487, "Shox2": 0.46393323034672157, "Lhx6": 0.4515804491295338, "Tox3": 0.4852607709750567, "Zfhx4": 0.5781626786263572, "Prox1": 0.4407914606246395, "Meis1": 0.5978099548460518, "Gbx2": 0.4486880053789125, "En1": 0.5182752824361831, "Eomes": 0.45946278651796046, "Olig2": 0.534506558153507, "Etv1": 0.38265408301206627, "Fosl2": 0.40705774075809564, "Sall3": 0.4689635322836828, "Insm1": 0.46008382249493107, "Sp9": 0.46990186498214676, "Foxp4": 0.4993879059334253, "Zfp536": 0.4608621563681449, "Plagl1": 0.46591957951743457, "Irx2": 0.5158872103200274, "St18": 0.5001186649118643, "Sox21": 0.40340059880527296, "Tox2": 0.4677429090275706, "Rarb": 0.5415840181354491, "Ets1": 0.5376436956389514, "Otx2": 0.522816324070167, "Sox6": 0.5155186891865802, "Lef1": 0.5121164098904328, "Zbtb16": 0.5579606222293484, "Irx1": 0.47556665170556556, "En2": 0.47848720800889877, "Nr3c2": 0.5556323118530679, "Sp8": 0.45231083598773963, "Tfap2a": 0.49063966182003993, "Bcl6": 0.5141528070790127, "Lhx1": 0.4739561679634139, "Nr2e1": 0.4299352854488371, "Hoxa5": 0.4898482581748237, "Uncx": 0.5418954091117867, "Pax3": 0.46428681052211546, "Gata3": 0.48687306787246803, "Dlx2": 0.4530582740954424, "Otp": 0.45319362176527556, "Six3": 0.46484519608372044, "Lhx5": 0.5026091538235503, "Ebf2": 0.5228090524456629, "Prdm13": 0.45363291205076195, "Irx5": 0.4927711403467993, "Onecut1": 0.5109507178890182, "Msx1": 0.43394734660826206, "Barhl1": 0.4873332907919086, "Sox10": 0.5579346155584686, "Sp5": 0.4896401724730034, "Gata2": 0.5340444117511839, "Neurog2": 0.4718333370428899, "Tal1": 0.5296423713897112, "Pou4f2": 0.4702401499087726, "Nkx2-2": 0.5242297517569409, "Tfap2c": 0.47884713580573784, "Nkx2-1": 0.5248686051347979, "Bnc2": 0.4479464323794089, "Lmx1b": 0.46135287830203087, "Ikzf1": 0.4879872311827957, "Thrb": 0.48682613230290495, "Foxb1": 0.4257944169911968, "Prdm16": 0.5197915616493598, "Sim1": 0.4936392041831399, "Dmbx1": 0.4498820526702502, "Onecut3": 0.5281163768853645, "Fezf1": 0.43890240401323644, "Glis3": 0.5418929003370989, "Irx3": 0.4497985110306673, "Dbx2": 0.48394517707287044, "Pax7": 0.529509231497554, "Nkx2-4": 0.5115320838148837, "Lmx1a": 0.49555850520726974, "Hoxc4": 0.47862458051651185, "Six6": 0.4560364464692483, "Nhlh1": 0.4370426764792962, "Prdm12": 0.4979719712439509, "Pax8": 0.5201675643327349, "Tlx3": 0.44024056370898973, "Gbx1": 0.43381986235329323, "Pax2": 0.491377756414108, "Atoh1": 0.46578988570533897, "Mkx": 0.5803737539221948, "Sox14": 0.5287186556387029, "Insm2": 0.4677946548740627, "Foxa1": 0.4840694538098449, "Pitx2": 0.48759321775285613, "Nr5a2": 0.48671031279726934, "Evx2": 0.49533625354290134, "Hmx3": 0.4890593277690052, "Hoxc5": 0.50813188110629, "Nkx6-2": 0.3976929144209281, "Runx2": 0.615717047651541, "Barx2": 0.485059219819624, "Foxd3": 0.5003458734635237, "Hmx2": 0.4862980060897751, "Prdm6": 0.4493174691016418, "Hoxb6": 0.49773262490025494, "Lhx8": 0.4719427648040033, "Lhx3": 0.5122162306104787, "Lhx4": 0.49715403770900035, "Cux2": 0.486454968599469, "Fezf2": 0.5144017443290922, "Mafa": 0.4410647724875167, "Phox2b": 0.4649282156460592, "Rax": 0.5573021867041363, "Tbx20": 0.5124151869496174, "Ascl1": 0.48577495361683565, "Slc18a3": 0.4694235222933923, "Slc6a3": 0.5243257535695399, "Slc6a4": 0.5297111873409317, "Slc6a5": 0.4990883675701957, "Slc32a1": 0.5154397976364318, "Slc17a6": 0.5227305893470173, "Slc17a7": 0.42516430095794544, "Slc17a8": 0.5566557778685177, "Slc6a2": 0.5118304543475105, "Cacng4": 0.3980650648104592, "Gja1": 0.4161263333129407, "Gabbr2": 0.4473042410601948, "Sst": 0.45890574308071236, "Nts": 0.5761803605930892, "Grin2b": 0.5515405655774996, "Cck": 0.41173774489667964, "Penk": 0.5741249396022235, "Kcnma1": 0.6123719222401042, "Cbln2": 0.5337754647619214, "Grik3": 0.554545213948918, "Adgrg1": 0.4903871051677599, "Cnr1": 0.5263183354470446, "Adgrl3": 0.5833618355106035, "Cbln1": 0.4888079486920513, "Fxyd7": 0.4219812592058667, "Fzd1": 0.4599480056950143, "Cxcr4": 0.5296059808299274, "Gpr17": 0.656286751117234, "Nxph4": 0.5336554409749765, "Slc24a2": 0.6027867488949531, "Igf1": 0.5020992477695493, "Kcnb2": 0.602568512785231, "Sstr2": 0.4912294729073129, "Prokr2": 0.5216557796080659, "Chrm3": 0.5756162773425643, "Lpar1": 0.39712388223605083, "Kcnj6": 0.5644241251553782, "Kcnc4": 0.44152818117485637, "Kcnj2": 0.6018581948963864, "Cacng5": 0.5123842937366917, "Htr7": 0.47292007233273053, "Grm1": 0.6072766387692472, "Npy1r": 0.5368867412049912, "Kcnn2": 0.6429068479083342, "Tacr3": 0.5257356679478575, "Trpc4": 0.6387093137443964, "Kcnh5": 0.6185275991507018, "Ackr3": 0.5533760434098088, "Adcyap1": 0.5411853135961645, "Agt": 0.38165150675078297, "Grik4": 0.6114018802872931, "Grp": 0.48378015393357093, "Kcnh1": 0.5921955647711574, "Hcrtr2": 0.5327677004095962, "Nxph2": 0.5088729884018288, "Stmn3": 0.4163448892242688, "Crmp1": 0.4016542235165717, "Dcx": 0.41480032382011217, "Vim": 0.36753825318033034, "Slc1a3": 0.3935302578183737, "Ppp1r1b": 0.4495424344991852, "Islr2": 0.4793351062593276, "Fn1": 0.543534645546842, "Prkcb": 0.40469528958620443, "Serpine2": 0.43959712964097025, "Olfm3": 0.5378167848520279, "Robo2": 0.5293629042018624, "Efnb2": 0.520538984211242, "Shisa6": 0.4645318816477935, "Ntrk2": 0.4913539103093546, "Sparc": 0.3389988364878497, "Ephb1": 0.5366630853681342, "Tnc": 0.54359763376396, "Ccnd2": 0.3195238080505892, "Dtx1": 0.4378056953015355, "Nrp1": 0.6100363066118942, "Aldoc": 0.2830566460501463, "Shtn1": 0.4394513563573183, "Ptprn2": 0.5530031525167506, "Vstm2l": 0.4590272813356037, "Pla2g7": 0.4022823994325666, "Klhl13": 0.4564975031169808, "Fat4": 0.5039621108274713, "Pou3f2": 0.4715547261288647, "Fat1": 0.5319918981975374, "Zfp462": 0.5243061120906128, "Pcdh10": 0.502960300002907, "Dusp4": 0.42528178781426423, "Sema3a": 0.5229595606084273, "Luzp2": 0.4977648909445214, "Calb2": 0.42114775465664356, "H19": 0.3229283653148627, "Cdh4": 0.5093599856460284, "Dab1": 0.45881198235990106, "Lmo3": 0.40263220207957545, "Runx1t1": 0.4730614728300226, "Mpped2": 0.46128521261164973, "Mpped1": 0.41349387727934933, "Hs6st2": 0.5165385418993206, "Gng4": 0.3346737780619579, "Gad2": 0.5275394709326642, "Nrgn": 0.3035493272810398, "Hs6st3": 0.5242335098739138, "Resp18": 0.515381780911419, "Ptprt": 0.5205371415221623, "Nrp2": 0.5188281754280748, "Cldn5": 0.5940714257367876, "Ralyl": 0.4235428285328846, "Vat1l": 0.41838265515824086, "Sema3c": 0.44748040240183184, "Slc4a4": 0.4318187927355812, "Spon1": 0.5704212155893876, "Mdk": 0.41519669269243537, "Ptgds": 0.3863012251795522, "Gad1": 0.47610289554508956, "Nrcam": 0.5505218905895035, "Sla": 0.41401193668580344, "Cxxc5": 0.4334650519141856, "Dpy19l1": 0.5548559231590181, "Sez6l": 0.5055711896053683, "Nefm": 0.3931252124718575, "Camk1": 0.48789230720475507, "Pde1a": 0.4599173461905926, "Abca1": 0.5254390056349036, "Cachd1": 0.5362762791137148, "Cd9": 0.4467944336365389, "Cdh8": 0.5949749129203854, "Pcdh11x": 0.4481686196747389, "Aldh1l1": 0.35109777115780094, "Igsf21": 0.4819162966606588, "Efna5": 0.5319169639961077, "Dkk3": 0.4818111991135399, "Nrn1": 0.48366686388473185, "Mki67": 0.5329625932791483, "Pdgfra": 0.5406999384830715, "Crym": 0.3389071599190059, "Dach1": 0.5346059329113976, "Clstn2": 0.5010975984854124, "Pcdh8": 0.48163482462258944, "Tbc1d30": 0.4797188897407829, "Lhfpl3": 0.5032676060565134, "Spock3": 0.5183609844746283, "Gda": 0.42244003927437423, "AI593442": 0.4820816147647088, "Prmt8": 0.4486219586320552, "Pcsk2": 0.5485527608536326, "Nos1": 0.42365148939976743, "Pid1": 0.4560610903924703, "Ntng2": 0.4639308212228941, "Thsd7a": 0.5149759224878162, "Rgs10": 0.3982392323681539, "Nell1": 0.5789167912727233, "Tnr": 0.6385683046209265, "Unc5c": 0.5711492144288508, "Tgfb2": 0.4950474547023296, "Rgs8": 0.4501089051443271, "Lamc1": 0.5138470432588079, "Cntnap4": 0.6479990446763094, "Tspan9": 0.4563061704566017, "Dok5": 0.4540032070020171, "Peg10": 0.43958913358287827, "St6galnac5": 0.5051457487572915, "Sox2ot": 0.5789166885461504, "Shisa9": 0.589244740519716, "Spats2l": 0.4859740967672284, "Adamts3": 0.5639625943646345, "Cdh12": 0.5409080361006755, "Mab21l1": 0.4688289745404133, "Unc13c": 0.39228293917919715, "Gpc4": 0.49867752554563965, "Sulf1": 0.5432917549461371, "Elmo1": 0.5033768294833363, "Brinp3": 0.582095209360651, "Rprm": 0.39966845154192593, "Tspan18": 0.5190361750569188, "Ildr2": 0.48633408120589006, "Mlc1": 0.3935890176683345, "Tppp3": 0.4623361865375315, "Mir100hg": 0.7485215324304377, "Wnt7b": 0.40254966369466605, "Mdga1": 0.500125941489427, "Cpne4": 0.4298873968776418, "B230209E15Rik": 0.41638636693880404, "Chd7": 0.5870698353505717, "Cadps2": 0.4842487399913389, "Dusp6": 0.4983787261662826, "Smoc1": 0.5294260950217347, "Ccna2": 0.4715445784756385, "Lifr": 0.5459960019819234, "Tafa2": 0.44208979027439066, "Tmem163": 0.5316179927715946, "Arhgap29": 0.5267416416467355, "Hist1h1d": 0.4802931191521073, "Ntng1": 0.6491714886450555, "Tmem164": 0.4518066864200351, "Samd5": 0.6293644796210123, "Lrrtm3": 0.6011112932156938, "Dscaml1": 0.649046103818099, "Sfrp2": 0.513720775763165, "Pdzrn3": 0.43496910177358544, "Creg2": 0.4769442842052427, "Fam210b": 0.37000007774417504, "Gpc3": 0.47940696153287105, "Dock4": 0.6112990659293653, "Plce1": 0.5097900457146317, "Cyb561": 0.5280065050984644, "Rftn1": 0.4801580387752531, "Sema5a": 0.5174552176791848, "Jam2": 0.46286264528335885, "Kirrel3": 0.5996052298414014, "Pcbd1": 0.3676742100543335, "Tafa1": 0.5243250740994905, "Egfr": 0.5314909881814838, "Fbln2": 0.5924229908175603, "Kcnk9": 0.6345613262943246, "Kif11": 0.5391964034841248, "Pmepa1": 0.5182551023578019, "Dio2": 0.38278668388896375, "Tmem132d": 0.6494694976747666, "Igsf11": 0.646745480108517, "Sorcs3": 0.5724366600572813, "Mcm3": 0.42289214590151714, "Galnt17": 0.6152069137874326, "Slc2a13": 0.598007067925901, "Tmem200a": 0.5120819745647224, "Myorg": 0.458465603436805, "Phlda1": 0.5035221901058198, "9130024F11Rik": 0.5398072421603283, "Vstm2b": 0.5990265620597913, "Fam135b": 0.5903163467902052, "Tiam2": 0.5127380372407343, "Palmd": 0.5464656238241143, "Fhit": 0.4569417786308381, "Sdk1": 0.6261981364922443, "Ccdc80": 0.4485141533192304, "Cntn3": 0.6534012228637167, "Pde1c": 0.5555720898592164, "Cdh9": 0.6120933418843284, "Pclaf": 0.4445502218636547, "Lhfp": 0.4740991510861481, "Tmtc1": 0.5744440863680309, "Lpl": 0.46928903438085956, "Lmo1": 0.40863928841786523, "Dgkg": 0.5373926187776915, "Slc43a2": 0.6410274711548756, "Fgfr1": 0.5180199485544869, "Asb4": 0.46081552220706384, "Nbl1": 0.4115909521703418, "Kctd8": 0.5631265436582885, "Iqgap2": 0.5803768391653681, "C1qa": 0.4594029959014907, "Zmat4": 0.5137607102302054, "Synpr": 0.5029152204453323, "Slco1c1": 0.6055655157789216, "Lypd6": 0.430078950853208, "Dll1": 0.5932138690408985, "Galnt14": 0.6140587313407951, "Rgs6": 0.4743649964273638, "Rspo3": 0.49640956021578364, "Mlf1": 0.454331181284495, "Fam107a": 0.3824232783621175, "Angpt1": 0.5582691499789946, "Pdlim4": 0.4043777265540167, "Sncg": 0.4760162278259486, "Thbs1": 0.49384097007294764, "Prss12": 0.44770876325199666, "Inhbb": 0.48600389941110933, "Ptchd4": 0.6767169737902665, "Rprml": 0.40155223300499193, "C1qc": 0.4861397685475913, "C1ql3": 0.48489122568639326, "Cep112": 0.65529350481391, "Utrn": 0.5384073907185595, "Rai14": 0.5859306737349511, "Col25a1": 0.618025126843712, "Hs3st2": 0.45315499024686245, "Naaa": 0.47468527402238697, "Gas2l3": 0.51456137671198, "Laptm5": 0.5082196071412591, "Parm1": 0.494063227021265, "Met": 0.47209531261832044, "Slit3": 0.5445426975259378, "Col18a1": 0.5423438246865463, "Ostf1": 0.41520277275824274, "Thsd7b": 0.627786088404899, "Cenpf": 0.45279616344972456, "Gpc6": 0.6444670967602382, "Ptpru": 0.6303752406553089, "Cspg4": 0.6206122647473618, "Slitrk6": 0.5245571231568897, "Hmmr": 0.5040844737464212, "Mgat4c": 0.5563457330415755, "Fibcd1": 0.4659956671814912, "Syndig1": 0.4571655656546971, "Sdk2": 0.599472364187015, "Inhba": 0.5200678845961865, "Ung": 0.4427516966347163, "C1ql1": 0.5322143293614421, "Cdca3": 0.45125055607730713, "Eya2": 0.4389952276405166, "Prr16": 0.5899918111870536, "Ecrg4": 0.45688820233672933, "Adamtsl3": 0.5877196254709591, "C230072F16Rik": 0.47915286061409323, "Thrsp": 0.43631656804733726, "Rxfp1": 0.7700553218934804, "Pld5": 0.5973723101630773, "Tshr": 0.4826977518734388, "Dpyd": 0.6159450361968, "Hs3st3a1": 0.5047546331644339, "Arhgap6": 0.730152974895542, "Lhx9": 0.48236718095194686, "Frem2": 0.4942730700875528, "Spp1": 0.480648262601291, "Tbx3": 0.5440593025683859, "Il1rapl2": 0.6073025981588631, "Slc26a4": 0.49771941160819494, "Rerg": 0.4594567062818336, "Vsx2": 0.46746907591559544, "Nkx6-1": 0.4307018744014229, "Syt6": 0.5424496304847136, "Pde7b": 0.4669030095179377, "C1qb": 0.488972507609413, "Ccn3": 0.47521310445064224, "Ccnb1": 0.4604813758187005, "Rassf4": 0.4953137887081053, "Cald1": 0.5010878973216207, "Cdc20": 0.4515284981330254, "Pxdc1": 0.5110307999352716, "Irs4": 0.4193539488565833, "Nrsn2": 0.5261057396716923, "Dhrs3": 0.49284186058797114, "Bmp7": 0.4913541397171022, "Cenpa": 0.48138871896677093, "Ecel1": 0.574642637045499, "Cdh20": 0.5674543650335772, "Slc29a1": 0.6093445243314156, "Vav3": 0.529711263673094, "Rnf112": 0.6966045100936488, "Adcy8": 0.6058873531643503, "Htra1": 0.45447759534722687, "Ndst4": 0.5636262513904338, "Cdca2": 0.5327757449032933, "Crb2": 0.48753816125319055, "Abtb2": 0.44376207562793263, "Pde5a": 0.5609566097997974, "Ankfn1": 0.5448891116866721, "Blank-0": 0.5088771450626447, "Blank-1": 0.4766466445733223, "Blank-2": 0.4362809157349596, "Blank-3": 0.45290802978466493, "Blank-4": 0.45461840228245365, "Blank-5": 0.4921502663302495, "Blank-6": 0.4747625256099832, "Blank-7": 0.49647623331833857, "Blank-8": 0.46464433306955066, "Blank-9": 0.4543866671518504, "Blank-10": 0.46605163602575167, "Blank-11": 0.5086631289559491, "Blank-12": 0.502602791399472, "Blank-13": 0.4538685026489905, "Blank-14": 0.4918737156734541, "Blank-15": 0.47643889506542375, "Blank-16": 0.5220405780178076, "Blank-17": 0.49635188659578905, "Blank-18": 0.4478378484337633, "Blank-19": 0.47573211417274186, "Blank-20": 0.46524094506055536, "Blank-21": 0.4326008436957181, "Blank-22": 0.47634912980579547, "Blank-23": 0.5447817065605681, "Blank-24": 0.44689006798878284, "Blank-25": 0.47705526879012966, "Blank-26": 0.467940813810111, "Blank-27": 0.46012387950602085, "Blank-28": 0.5125274036955841, "Blank-29": 0.45925201662185283, "Blank-30": 0.4910406421344186, "Blank-31": 0.47383812480316734, "Blank-32": 0.4369253143178833, "Blank-33": 0.4888618874038072, "Blank-34": 0.5023489389275879, "Blank-35": 0.4716285924834193, "Blank-36": 0.5416355855679007, "Blank-37": 0.464472049689441, "Blank-38": 0.4627847193160758, "Blank-39": 0.4688611008949369, "Blank-40": 0.5020277603244416, "Blank-41": 0.45215809785742805, "Blank-42": 0.47526216724926057, "Blank-43": 0.48082587749483824, "Blank-44": 0.4281842818428184, "Blank-45": 0.5153702841173731, "Blank-46": 0.5060753341433779, "Blank-47": 0.46427386717972535, "Blank-48": 0.4931416897709033, "Blank-49": 0.464615737817827 }, "sum_signals_medians": { "PolyT_raw": 35748974.5, "PolyT_high_pass": 267269.0595378423, "DAPI_raw": 21304729.5, "DAPI_high_pass": 236981.9292273424 } } }, { "region_id": 1, "metrics": { "num_cells": 387109, "volume_stats": { "min": 8.747764796503265, "pct_5": 13.799827585086671, "pct_25": 41.69453367590127, "pct_50": 121.80619664544486, "pct_75": 436.623084585265, "pct_95": 1200.0685717499139, "max": 25851.4226995578, "mean": 326.9488625512755 }, "transcript_count_stats": { "min": 0.0, "pct_5": 0.0, "pct_25": 1.0, "pct_50": 63.0, "pct_75": 428.0, "pct_95": 1512.0, "max": 19875.0, "mean": 333.4849641832146 }, "ratio_covered": 0.30036632189148266, "ratio_transcripts_within_cell": 0.4981656514404675, "num_cells_with_no_transcripts": 96577, "enrichment": { "Neurod6": 0.4820122648849023, "Nr2f2": 0.4504852197007861, "Mef2c": 0.4410258060866393, "Nfib": 0.47138036012790263, "Nfix": 0.3482422300345332, "Zeb2": 0.4686158650118268, "Tcf7l2": 0.44598043354346856, "Id4": 0.4296380463769683, "Zic1": 0.4847306224844834, "Neurod2": 0.4490796282641477, "Sox5": 0.5723828600845069, "Tbr1": 0.48136785513681224, "Bhlhe22": 0.3850790363137903, "Nr2f1": 0.4623056481225549, "Foxg1": 0.5441984607564027, "Bcl11b": 0.43201251965292004, "Sox2": 0.4615462915553975, "Satb1": 0.46058079232990695, "Pou3f3": 0.4606953346020645, "Zic2": 0.4787762665310542, "Nr4a3": 0.4411882037398238, "Dlx1": 0.5309955615649158, "Etv5": 0.4587430922668193, "Arx": 0.4860379016487123, "Satb2": 0.5026211418258569, "Jun": 0.47208492490834064, "Tox": 0.521406189060882, "Rxrg": 0.49609994110408295, "Tshz2": 0.41344329501050303, "Tfap2b": 0.5049368886630559, "Pbx3": 0.5020183090919438, "Nr4a2": 0.48054595910970155, "Isl1": 0.5785839586784913, "Tfap2d": 0.5277535065532306, "Zfhx3": 0.5003289714160392, "Zfp521": 0.5325535999742945, "Foxp2": 0.5229550078501686, "Nhlh2": 0.4795237460571327, "Lhx2": 0.4210101536584282, "Zhx2": 0.4197320487129643, "Pax6": 0.49357348878955026, "Olig1": 0.3561777250490009, "Shox2": 0.49330602246811384, "Lhx6": 0.4904152191701441, "Tox3": 0.5016681858810411, "Zfhx4": 0.6048129928056969, "Prox1": 0.46147516630715824, "Meis1": 0.6269857700102421, "Gbx2": 0.48261470572598225, "En1": 0.549052786463123, "Eomes": 0.460914485761858, "Olig2": 0.5486002017429266, "Etv1": 0.4191014563669375, "Fosl2": 0.43617138138456646, "Sall3": 0.4845840439103314, "Insm1": 0.4718893615658477, "Sp9": 0.4941624444652398, "Foxp4": 0.5207083139987574, "Zfp536": 0.48238424693986165, "Plagl1": 0.4851711592058808, "Irx2": 0.5374736438566226, "St18": 0.5169133974833456, "Sox21": 0.4102172201380205, "Tox2": 0.49885699503996006, "Rarb": 0.5588609755607767, "Ets1": 0.559526608064311, "Otx2": 0.5053713030432919, "Sox6": 0.540622710151821, "Lef1": 0.5300244257211076, "Zbtb16": 0.5871337946775588, "Irx1": 0.4881472496673222, "En2": 0.5152414351227408, "Nr3c2": 0.5679559282924622, "Sp8": 0.4740319430081581, "Tfap2a": 0.5058694057226706, "Bcl6": 0.5249064188103795, "Lhx1": 0.5134012261235243, "Nr2e1": 0.4336715853532444, "Hoxa5": 0.5251834143928777, "Uncx": 0.5745894909688013, "Pax3": 0.5083830049622692, "Gata3": 0.5183291698135131, "Dlx2": 0.47434903756845914, "Otp": 0.48218515594157124, "Six3": 0.494229737192101, "Lhx5": 0.5367526649158041, "Ebf2": 0.5516517468113761, "Prdm13": 0.49353098318579436, "Irx5": 0.513390047779979, "Onecut1": 0.538875789153419, "Msx1": 0.392070566044714, "Barhl1": 0.5106985091109884, "Sox10": 0.5719555574057884, "Sp5": 0.4933192172897196, "Gata2": 0.5651793386588587, "Neurog2": 0.4784163858506372, "Tal1": 0.5665838534407885, "Pou4f2": 0.49876443882535487, "Nkx2-2": 0.5379001501744833, "Tfap2c": 0.47623722539631447, "Nkx2-1": 0.5700655652950438, "Bnc2": 0.4848398979880986, "Lmx1b": 0.4961295099623048, "Ikzf1": 0.5030044413480798, "Thrb": 0.5077802416271601, "Foxb1": 0.4495085498855527, "Prdm16": 0.523267667215249, "Sim1": 0.5195994496254396, "Dmbx1": 0.49785391423253694, "Onecut3": 0.548490792197886, "Fezf1": 0.47731779247315076, "Glis3": 0.5358101479054442, "Irx3": 0.47405336553572314, "Dbx2": 0.5124376323629707, "Pax7": 0.5574337921597038, "Nkx2-4": 0.5514590439066644, "Lmx1a": 0.47003504070905905, "Hoxc4": 0.5214310319374047, "Six6": 0.45280855941918224, "Nhlh1": 0.4403201219512195, "Prdm12": 0.5278945116887692, "Pax8": 0.5469476293771305, "Tlx3": 0.47498540003893325, "Gbx1": 0.4873236608263467, "Pax2": 0.5267702936096719, "Atoh1": 0.5114037397945747, "Mkx": 0.6142236658231672, "Sox14": 0.5551624088882599, "Insm2": 0.49455345959691804, "Foxa1": 0.509349634231887, "Pitx2": 0.5139527979812973, "Nr5a2": 0.5239905848270867, "Evx2": 0.521157601941173, "Hmx3": 0.5101430239346176, "Hoxc5": 0.5438538316145505, "Nkx6-2": 0.415979528006824, "Runx2": 0.6422363847045192, "Barx2": 0.5170164393144456, "Foxd3": 0.5326051158195192, "Hmx2": 0.5230292736537117, "Prdm6": 0.4491704202063972, "Hoxb6": 0.5291475580350811, "Lhx8": 0.5210434486573897, "Lhx3": 0.5291763218875079, "Lhx4": 0.5267126064045399, "Cux2": 0.5181653478075965, "Fezf2": 0.5482783730365131, "Mafa": 0.464476840745525, "Phox2b": 0.517213062977702, "Rax": 0.5658886894075404, "Tbx20": 0.5307617552515511, "Ascl1": 0.5046042900329198, "Slc18a3": 0.5682074189162944, "Slc6a3": 0.5659306553161302, "Slc6a4": 0.5806846797794868, "Slc6a5": 0.5192858345965976, "Slc32a1": 0.5649796221762073, "Slc17a6": 0.5559535470734587, "Slc17a7": 0.4641880178937988, "Slc17a8": 0.6167056654612494, "Slc6a2": 0.5468497928929583, "Cacng4": 0.42342600694951615, "Gja1": 0.4308427403708372, "Gabbr2": 0.4842556323687726, "Sst": 0.4816261340560262, "Nts": 0.5958030465836547, "Grin2b": 0.5829228629167691, "Cck": 0.41845549706215324, "Penk": 0.5988929336242833, "Kcnma1": 0.6447669336454315, "Cbln2": 0.5572335836579275, "Grik3": 0.5958701147826656, "Adgrg1": 0.5142844809457748, "Cnr1": 0.5606341509551012, "Adgrl3": 0.6179432037031967, "Cbln1": 0.5304763547045509, "Fxyd7": 0.44687625355841026, "Fzd1": 0.4729355175744672, "Cxcr4": 0.5425232933228116, "Gpr17": 0.6782483716791952, "Nxph4": 0.5911415364074919, "Slc24a2": 0.6321968697729295, "Igf1": 0.5190648320895522, "Kcnb2": 0.6383342676251401, "Sstr2": 0.5058196927023786, "Prokr2": 0.542374666479427, "Chrm3": 0.6024645604241887, "Lpar1": 0.39269878034784605, "Kcnj6": 0.6001481945908974, "Kcnc4": 0.48052523704560174, "Kcnj2": 0.6312896827595377, "Cacng5": 0.5504844708725214, "Htr7": 0.5134880803011292, "Grm1": 0.6475223896848658, "Npy1r": 0.5615415814499357, "Kcnn2": 0.6644883536879714, "Tacr3": 0.5606715634837356, "Trpc4": 0.667260530759578, "Kcnh5": 0.6431057272942063, "Ackr3": 0.5803578885826443, "Adcyap1": 0.5761308404583674, "Agt": 0.39721788679898345, "Grik4": 0.6396304674426007, "Grp": 0.5120548538264873, "Kcnh1": 0.6260776796483105, "Hcrtr2": 0.5435283345494084, "Nxph2": 0.5481606835709926, "Stmn3": 0.4336456957499225, "Crmp1": 0.4386502510559746, "Dcx": 0.4318856972148036, "Vim": 0.3653533844004224, "Slc1a3": 0.41326384729211063, "Ppp1r1b": 0.4667398925103127, "Islr2": 0.5166199704165598, "Fn1": 0.5853186555428206, "Prkcb": 0.42932716886949357, "Serpine2": 0.45175796381354205, "Olfm3": 0.5645556196684497, "Robo2": 0.5700576314379222, "Efnb2": 0.552252073553288, "Shisa6": 0.4783782016823815, "Ntrk2": 0.5214048423653784, "Sparc": 0.3535450997398092, "Ephb1": 0.5641632746275473, "Tnc": 0.5551182916044566, "Ccnd2": 0.32479861048722786, "Dtx1": 0.46654224607405664, "Nrp1": 0.6220303258063462, "Aldoc": 0.2946985297227973, "Shtn1": 0.46249621003694513, "Ptprn2": 0.5996151893128999, "Vstm2l": 0.49115482322170356, "Pla2g7": 0.42874490060442333, "Klhl13": 0.46676909109954956, "Fat4": 0.5318716010802902, "Pou3f2": 0.5054476990030556, "Fat1": 0.561127231916686, "Zfp462": 0.5440919110889898, "Pcdh10": 0.5373758239761688, "Dusp4": 0.4483887070830329, "Sema3a": 0.5634356439915058, "Luzp2": 0.5139772893206552, "Calb2": 0.44166811180058657, "H19": 0.28814971123944916, "Cdh4": 0.5528618797254187, "Dab1": 0.4768218593957587, "Lmo3": 0.426193915667285, "Runx1t1": 0.5018622374147212, "Mpped2": 0.4848030391309005, "Mpped1": 0.44050993282547957, "Hs6st2": 0.5537037990924885, "Gng4": 0.35967989321968413, "Gad2": 0.567042410302204, "Nrgn": 0.31686659959125085, "Hs6st3": 0.562930394499932, "Resp18": 0.53101256409759, "Ptprt": 0.5553947570711836, "Nrp2": 0.5489553501273073, "Cldn5": 0.6092534178177147, "Ralyl": 0.4439951356366365, "Vat1l": 0.44582462680576834, "Sema3c": 0.45220980060403854, "Slc4a4": 0.4467687904561543, "Spon1": 0.5972914628275016, "Mdk": 0.41825434783751253, "Ptgds": 0.3351016272277523, "Gad1": 0.5090828602880972, "Nrcam": 0.5775247426613856, "Sla": 0.4508373874283134, "Cxxc5": 0.4482874327140251, "Dpy19l1": 0.5779779493120549, "Sez6l": 0.5564392056693566, "Nefm": 0.4416889825376271, "Camk1": 0.5103816868493016, "Pde1a": 0.47820357486353815, "Abca1": 0.5333904323689015, "Cachd1": 0.5603927005928783, "Cd9": 0.4589563305825497, "Cdh8": 0.6278730447199325, "Pcdh11x": 0.47574505577225756, "Aldh1l1": 0.3607989367624548, "Igsf21": 0.524686615732293, "Efna5": 0.5650818014593917, "Dkk3": 0.5085466078704721, "Nrn1": 0.49199222301484064, "Mki67": 0.5567947838023336, "Pdgfra": 0.5614416393660351, "Crym": 0.34303273595456957, "Dach1": 0.5607538354143199, "Clstn2": 0.5384420055142842, "Pcdh8": 0.5135172114803672, "Tbc1d30": 0.5187685500564031, "Lhfpl3": 0.520122496979719, "Spock3": 0.5513677972535185, "Gda": 0.44890788408745114, "AI593442": 0.5223383257590414, "Prmt8": 0.473583512819831, "Pcsk2": 0.5834877604003931, "Nos1": 0.44419090470834005, "Pid1": 0.481816486385677, "Ntng2": 0.48369799161224464, "Thsd7a": 0.5450254764336235, "Rgs10": 0.41836567743161296, "Nell1": 0.6145804383283223, "Tnr": 0.6671571133472155, "Unc5c": 0.6101545741549732, "Tgfb2": 0.5124344935103965, "Rgs8": 0.4730600763435727, "Lamc1": 0.5340057824050953, "Cntnap4": 0.6877284301200213, "Tspan9": 0.4786084365057342, "Dok5": 0.48501186568659177, "Peg10": 0.4682291141791797, "St6galnac5": 0.5354013858126748, "Sox2ot": 0.6007409869817917, "Shisa9": 0.6255181884285249, "Spats2l": 0.5182007235455802, "Adamts3": 0.5982410361939476, "Cdh12": 0.5645154995902333, "Mab21l1": 0.5049863855804086, "Unc13c": 0.40489645075438496, "Gpc4": 0.5232155634197753, "Sulf1": 0.5516695781666142, "Elmo1": 0.5276236397533596, "Brinp3": 0.6198055473299773, "Rprm": 0.43239294017136143, "Tspan18": 0.5331108639228773, "Ildr2": 0.5217958147141631, "Mlc1": 0.40692022607812384, "Tppp3": 0.48413722364781314, "Mir100hg": 0.7728194524524326, "Wnt7b": 0.43419666441036814, "Mdga1": 0.5287699002264878, "Cpne4": 0.45525950616749516, "B230209E15Rik": 0.4372650073206442, "Chd7": 0.6046574992917955, "Cadps2": 0.5037476584196338, "Dusp6": 0.5165955320460603, "Smoc1": 0.5635169133351006, "Ccna2": 0.48817580891981005, "Lifr": 0.5746145682967182, "Tafa2": 0.4687026061890267, "Tmem163": 0.5758604829919544, "Arhgap29": 0.5479918055894901, "Hist1h1d": 0.5199617608230528, "Ntng1": 0.6888342494448728, "Tmem164": 0.46965370817775826, "Samd5": 0.6519886680497, "Lrrtm3": 0.6424338583881327, "Dscaml1": 0.6744975593064474, "Sfrp2": 0.5469724106207855, "Pdzrn3": 0.4593375579702279, "Creg2": 0.5040892032019437, "Fam210b": 0.378430345599472, "Gpc3": 0.5014111626925511, "Dock4": 0.6295304790505508, "Plce1": 0.517757815412278, "Cyb561": 0.5601182963814116, "Rftn1": 0.5045675633269991, "Sema5a": 0.539358996994474, "Jam2": 0.48291241210802044, "Kirrel3": 0.6398361463665035, "Pcbd1": 0.39095404971669995, "Tafa1": 0.5610550722340025, "Egfr": 0.5540369190846898, "Fbln2": 0.6065906509687503, "Kcnk9": 0.6894623551676959, "Kif11": 0.5586284114765571, "Pmepa1": 0.5499635093729643, "Dio2": 0.3896883811197774, "Tmem132d": 0.6801119765352541, "Igsf11": 0.6671136576049412, "Sorcs3": 0.6103816005064422, "Mcm3": 0.4342041282730787, "Galnt17": 0.642202049945141, "Slc2a13": 0.6321463282937365, "Tmem200a": 0.5502905516086802, "Myorg": 0.4810347549561334, "Phlda1": 0.5265632962507115, "9130024F11Rik": 0.5669050812099538, "Vstm2b": 0.6321224956047353, "Fam135b": 0.6137842619420015, "Tiam2": 0.5445506127383635, "Palmd": 0.5602002384791961, "Fhit": 0.47716195515944854, "Sdk1": 0.6671791418370329, "Ccdc80": 0.453550860953279, "Cntn3": 0.6976861537763717, "Pde1c": 0.5790886304714982, "Cdh9": 0.6495112622184446, "Pclaf": 0.4614793678665496, "Lhfp": 0.49781614594299844, "Tmtc1": 0.6060553265159406, "Lpl": 0.4844595774401956, "Lmo1": 0.42987746451882, "Dgkg": 0.5641333811401936, "Slc43a2": 0.6697543158827853, "Fgfr1": 0.5269583353363829, "Asb4": 0.48627255036027983, "Nbl1": 0.4261999376655758, "Kctd8": 0.5947045634096109, "Iqgap2": 0.5863902215513989, "C1qa": 0.47911713590545707, "Zmat4": 0.5460898291086971, "Synpr": 0.5213362262863982, "Slco1c1": 0.620249690892665, "Lypd6": 0.4659581932595846, "Dll1": 0.5989137933429329, "Galnt14": 0.6495369794735676, "Rgs6": 0.5079105931591861, "Rspo3": 0.51774055143081, "Mlf1": 0.461591608567301, "Fam107a": 0.38781485315309827, "Angpt1": 0.5739598164847334, "Pdlim4": 0.406761233330502, "Sncg": 0.49385775480582006, "Thbs1": 0.5197992927162179, "Prss12": 0.4808974886784685, "Inhbb": 0.5048099843356262, "Ptchd4": 0.7077666721284614, "Rprml": 0.42340148433597374, "C1qc": 0.4956257583857309, "C1ql3": 0.5086966204126767, "Cep112": 0.6686492365729076, "Utrn": 0.5562537325616866, "Rai14": 0.6165738779683488, "Col25a1": 0.6567483380918455, "Hs3st2": 0.4965053212763259, "Naaa": 0.4750975800156128, "Gas2l3": 0.5484955407996, "Laptm5": 0.5209645883119705, "Parm1": 0.5305958797658807, "Met": 0.5271876804166225, "Slit3": 0.5654829802220269, "Col18a1": 0.5553512671740386, "Ostf1": 0.4262165947018322, "Thsd7b": 0.6632401562969642, "Cenpf": 0.46442982496271423, "Gpc6": 0.6684703905963755, "Ptpru": 0.6618650798007635, "Cspg4": 0.6452219571891277, "Slitrk6": 0.5477191641182467, "Hmmr": 0.532750347803867, "Mgat4c": 0.5768647620180158, "Fibcd1": 0.4925250562938761, "Syndig1": 0.4863430530015887, "Sdk2": 0.6364338199185497, "Inhba": 0.5519041271099422, "Ung": 0.4619515016531565, "C1ql1": 0.549798713426022, "Cdca3": 0.4626694830251466, "Eya2": 0.45688312549015275, "Prr16": 0.6196012498612147, "Ecrg4": 0.4465233881163085, "Adamtsl3": 0.6192191128429173, "C230072F16Rik": 0.4968194169960474, "Thrsp": 0.4433595679520532, "Rxfp1": 0.8168934518838729, "Pld5": 0.6419341096279466, "Tshr": 0.5192876249472054, "Dpyd": 0.6367190509205762, "Hs3st3a1": 0.5386285714285715, "Arhgap6": 0.7515077566672477, "Lhx9": 0.512014828846996, "Frem2": 0.519520763507443, "Spp1": 0.49278379128504024, "Tbx3": 0.5783427349766891, "Il1rapl2": 0.640303968477343, "Slc26a4": 0.5439512247299176, "Rerg": 0.4683585038814397, "Vsx2": 0.49163633818589025, "Nkx6-1": 0.4764658262981381, "Syt6": 0.5663927388264903, "Pde7b": 0.47470587256419217, "C1qb": 0.4968383895937852, "Ccn3": 0.5352646670960223, "Ccnb1": 0.5140276836281734, "Rassf4": 0.5189425254304303, "Cald1": 0.5132271606583594, "Cdc20": 0.4689545979716719, "Pxdc1": 0.5332056242475638, "Irs4": 0.4490153110592521, "Nrsn2": 0.5593324142519779, "Dhrs3": 0.499149727647137, "Bmp7": 0.4957809335023126, "Cenpa": 0.4958656950868313, "Ecel1": 0.6383448347309594, "Cdh20": 0.6051958000717417, "Slc29a1": 0.6414353648975761, "Vav3": 0.5525375728124094, "Rnf112": 0.7260387123930332, "Adcy8": 0.6442050662310116, "Htra1": 0.4721417643750794, "Ndst4": 0.5832608101051794, "Cdca2": 0.5595238095238095, "Crb2": 0.4882929049441195, "Abtb2": 0.4612807614959102, "Pde5a": 0.5888774437447568, "Ankfn1": 0.5645886059604359, "Blank-0": 0.5387899961182276, "Blank-1": 0.5064536667245471, "Blank-2": 0.47281334742841385, "Blank-3": 0.49207149661007454, "Blank-4": 0.48422968054993937, "Blank-5": 0.5261618459538512, "Blank-6": 0.5161109104771077, "Blank-7": 0.5210922041946973, "Blank-8": 0.5105500582072177, "Blank-9": 0.4910176824680211, "Blank-10": 0.4999608426658313, "Blank-11": 0.5203054742702162, "Blank-12": 0.5401561413001469, "Blank-13": 0.5054837392842564, "Blank-14": 0.5290322580645161, "Blank-15": 0.5154910449028096, "Blank-16": 0.53888760673898, "Blank-17": 0.538328453553367, "Blank-18": 0.49291391563985026, "Blank-19": 0.5122930581906073, "Blank-20": 0.4894837476099426, "Blank-21": 0.48180045971660507, "Blank-22": 0.5120092601524067, "Blank-23": 0.5646510054137664, "Blank-24": 0.48204145699644524, "Blank-25": 0.5076239091058785, "Blank-26": 0.49785309001686856, "Blank-27": 0.49585462257784635, "Blank-28": 0.5253685532251314, "Blank-29": 0.49534428562955934, "Blank-30": 0.5084923220102373, "Blank-31": 0.5059375268909733, "Blank-32": 0.463894875895154, "Blank-33": 0.5330076862294375, "Blank-34": 0.5254003313086693, "Blank-35": 0.5002533111384526, "Blank-36": 0.5753540571835754, "Blank-37": 0.4871845555775186, "Blank-38": 0.4915881730720798, "Blank-39": 0.5098662428817375, "Blank-40": 0.5285611854684512, "Blank-41": 0.4960530470476792, "Blank-42": 0.49694305145290923, "Blank-43": 0.5119961224654657, "Blank-44": 0.4645809932421235, "Blank-45": 0.5493369296471117, "Blank-46": 0.5245296938399114, "Blank-47": 0.49462061155152887, "Blank-48": 0.5264958764695561, "Blank-49": 0.4923754855916971 }, "sum_signals_medians": { "PolyT_raw": 47566135.0, "PolyT_high_pass": 395830.68458127533, "DAPI_raw": 29587506.0, "DAPI_high_pass": 331006.67167406564 } } } ] }