[/usr/local/lib/python3.8/site-packages/brainreg/bin/nifty_reg/linux_x64/reg_aladin] 
[/usr/local/lib/python3.8/site-packages/brainreg/bin/nifty_reg/linux_x64/reg_aladin] Command line:
[/usr/local/lib/python3.8/site-packages/brainreg/bin/nifty_reg/linux_x64/reg_aladin] 	 /usr/local/lib/python3.8/site-packages/brainreg/bin/nifty_reg/linux_x64/reg_aladin -ln 6 -lp 5 -flo /bil/users/noisysky/brainreg_output/niftyreg/brain_filtered.nii -ref /bil/users/noisysky/brainreg_output/niftyreg/downsampled_filtered.nii -aff /bil/users/noisysky/brainreg_output/niftyreg/affine_matrix.txt -res /bil/users/noisysky/brainreg_output/niftyreg/affine_registered_atlas_brain.nii -omp 52
[/usr/local/lib/python3.8/site-packages/brainreg/bin/nifty_reg/linux_x64/reg_aladin] 
[/usr/local/lib/python3.8/site-packages/brainreg/bin/nifty_reg/linux_x64/reg_aladin] OpenMP is used with 52 thread(s)
[reg_aladin_sym] Parameters
[reg_aladin_sym] Platform: cpu_platform
[reg_aladin_sym] Reference image name: /bil/users/noisysky/brainreg_output/niftyreg/downsampled_filtered.nii
[reg_aladin_sym] 	430x236x412 voxels
[reg_aladin_sym] 	0.025x0.025x0.025 mm
[reg_aladin_sym] Floating image name: /bil/users/noisysky/brainreg_output/niftyreg/brain_filtered.nii
[reg_aladin_sym] 	528x320x456 voxels
[reg_aladin_sym] 	0.025x0.025x0.025 mm
[reg_aladin_sym] Maximum iteration number: 5
[reg_aladin_sym] 	(10 during the first level)
[reg_aladin_sym] Percentage of blocks: 50 %
[reg_aladin_sym] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Current level 1 / 6
[reg_aladin_sym] reference image size: 	54x59x52 voxels	0.2x0.1x0.2 mm
[reg_aladin_sym] floating image size: 	33x40x57 voxels	0.4x0.2x0.2 mm
[reg_aladin_sym] Block size = [4 4 4]
[reg_aladin_sym] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [14 15 13]
[reg_aladin_sym] Backward Block number = [9 10 15]
[reg_aladin_sym] Initial forward transformation matrix::
1	0	0	1.225
0	1	0	1.05
0	0	1	0.5500002
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
1	0	0	-1.225
0	1	0	-1.05
0	0	1	-0.5500002
0	0	0	1
[reg_aladin_sym] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.245177	0.0511571	0.03239213	-0.04666178
-0.01227876	1.509848	0.09078193	-0.4934537
-0.04700556	-0.058166	1.265938	-0.280822
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.8021246	-0.02789145	-0.01852419	0.01846342
0.004719411	0.6603297	-0.04747378	0.3127307
0.03000053	0.0293045	0.7870588	0.2368837
0	0	0	1
[reg_aladin_sym] - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 2 / 6
[reg_aladin_sym] reference image size: 	54x59x52 voxels	0.2x0.1x0.2 mm
[reg_aladin_sym] floating image size: 	33x40x57 voxels	0.4x0.2x0.2 mm
[reg_aladin_sym] Block size = [4 4 4]
[reg_aladin_sym] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [14 15 13]
[reg_aladin_sym] Backward Block number = [9 10 15]
[reg_aladin_sym] Initial forward transformation matrix::
1.245177	0.0511571	0.03239213	-0.04666178
-0.01227876	1.509848	0.09078193	-0.4934537
-0.04700556	-0.058166	1.265938	-0.280822
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
0.8021246	-0.02789145	-0.01852419	0.01846342
0.004719411	0.6603297	-0.04747378	0.3127307
0.03000053	0.0293045	0.7870588	0.2368837
0	0	0	1
[reg_aladin_sym] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.253844	0.06130816	0.03071208	-0.1293944
-0.009901381	1.557819	0.1035435	-0.6881519
-0.04672937	-0.06115249	1.268117	-0.2706608
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.796673	-0.03200798	-0.01668085	0.07654378
0.003102384	0.6397476	-0.05231143	0.4264863
0.02950655	0.02967112	0.7854336	0.2368223
0	0	0	1
[reg_aladin_sym] - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 3 / 6
[reg_aladin_sym] reference image size: 	54x59x52 voxels	0.2x0.1x0.2 mm
[reg_aladin_sym] floating image size: 	66x40x57 voxels	0.2x0.2x0.2 mm
[reg_aladin_sym] Block size = [4 4 4]
[reg_aladin_sym] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [14 15 13]
[reg_aladin_sym] Backward Block number = [17 10 15]
[reg_aladin_sym] Initial forward transformation matrix::
1.253844	0.06130816	0.03071208	-0.1293944
-0.009901381	1.557819	0.1035435	-0.6881519
-0.04672937	-0.06115249	1.268117	-0.2706608
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
0.796673	-0.03200798	-0.01668085	0.07654378
0.003102384	0.6397476	-0.05231143	0.4264863
0.02950655	0.02967112	0.7854336	0.2368223
0	0	0	1
[reg_aladin_sym] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.28796	0.04838345	0.02865132	-0.3101116
-0.02228852	1.581873	0.1140048	-0.732415
-0.05808306	-0.05833857	1.267185	-0.2193578
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.7753097	-0.0242797	-0.01534554	0.2192835
0.008335267	0.6298105	-0.05685062	0.4513969
0.03592105	0.02788227	0.7858298	0.2039388
0	0	0	1
[reg_aladin_sym] - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 4 / 6
[reg_aladin_sym] reference image size: 	108x59x103 voxels	0.1x0.1x0.1 mm
[reg_aladin_sym] floating image size: 	132x80x114 voxels	0.1x0.1x0.1 mm
[reg_aladin_sym] Block size = [4 4 4]
[reg_aladin_sym] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [27 15 26]
[reg_aladin_sym] Backward Block number = [33 20 29]
[reg_aladin_sym] Initial forward transformation matrix::
1.28796	0.04838345	0.02865132	-0.3101116
-0.02228852	1.581873	0.1140048	-0.732415
-0.05808306	-0.05833857	1.267185	-0.2193578
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
0.7753097	-0.0242797	-0.01534554	0.2192835
0.008335267	0.6298105	-0.05685062	0.4513969
0.03592105	0.02788227	0.7858298	0.2039388
0	0	0	1
[reg_aladin_sym] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.286998	0.05398872	0.04815228	-0.4275742
0.02663467	1.654424	0.1047989	-1.223187
-0.04568243	-0.04509068	1.274361	-0.3893057
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.7765763	-0.02608325	-0.02719828	0.2895508
-0.01423365	0.6035664	-0.04909732	0.7130746
0.02733455	0.02042096	0.7819949	0.3411013
0	0	0	1
[reg_aladin_sym] - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
[reg_aladin_sym] Current level 5 / 6
[reg_aladin_sym] reference image size: 	215x118x206 voxels	0.05x0.05x0.05 mm
[reg_aladin_sym] floating image size: 	264x160x228 voxels	0.05x0.05x0.05 mm
[reg_aladin_sym] Block size = [4 4 4]
[reg_aladin_sym] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Forward Block number = [54 30 52]
[reg_aladin_sym] Backward Block number = [66 40 57]
[reg_aladin_sym] Initial forward transformation matrix::
1.286998	0.05398872	0.04815228	-0.4275742
0.02663467	1.654424	0.1047989	-1.223187
-0.04568243	-0.04509068	1.274361	-0.3893057
0	0	0	1
[reg_aladin_sym] Initial backward transformation matrix::
0.7765763	-0.02608325	-0.02719828	0.2895508
-0.01423365	0.6035664	-0.04909732	0.7130746
0.02733455	0.02042096	0.7819949	0.3411013
0	0	0	1
[reg_aladin_sym] * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
[reg_aladin_sym] Final forward transformation matrix::
1.283687	0.02303708	0.0433288	-0.3272339
0.02451443	1.615247	0.1078353	-1.107994
-0.05783718	-0.04409694	1.268838	-0.2837065
0	0	0	1
[reg_aladin_sym] Final backward transformation matrix::
0.7780792	-0.01179518	-0.02556773	0.2342912
-0.01414382	0.6178816	-0.05202919	0.6652195
0.03497548	0.02093608	0.7851492	0.2573942
0	0	0	1
[reg_aladin_sym] - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Padding value here nan
[/usr/local/lib/python3.8/site-packages/brainreg/bin/nifty_reg/linux_x64/reg_aladin] Registration performed in 2 min 54 sec
[/usr/local/lib/python3.8/site-packages/brainreg/bin/nifty_reg/linux_x64/reg_aladin] Have a good day !